J3_3JBO_045

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UAAAAG*CUAUCAC*GCAAUAGUUCUUUAA

Length

28 nucleotides

Bulged bases

3JBO|1|AA|U|3624, 3JBO|1|AA|C|3625, 3JBO|1|AA|U|3662, 3JBO|1|AA|A|3663, 3JBO|1|AA|G|3664, 3JBO|1|AA|U|3669, 3JBO|1|AA|A|3671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|U|3575
3JBO|1|AA|A|3576
3JBO|1|AA|A|3577
3JBO|1|AA|A|3578
3JBO|1|AA|A|3579
3JBO|1|AA|G|3580
*
3JBO|1|AA|C|3621
3JBO|1|AA|U|3622
3JBO|1|AA|A|3623
3JBO|1|AA|U|3624
3JBO|1|AA|C|3625
3JBO|1|AA|A|3626
3JBO|1|AA|C|3627
*
3JBO|1|AA|G|3658
3JBO|1|AA|C|3659
3JBO|1|AA|A|3660
3JBO|1|AA|A|3661
3JBO|1|AA|U|3662
3JBO|1|AA|A|3663
3JBO|1|AA|G|3664
3JBO|1|AA|U|3665
3JBO|1|AA|U|3666
3JBO|1|AA|C|3667
3JBO|1|AA|U|3668
3JBO|1|AA|U|3669
3JBO|1|AA|U|3670
3JBO|1|AA|A|3671
3JBO|1|AA|A|3672

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A9

60S ribosomal protein eL33

Chain AI

60S ribosomal protein eL6

Chain AK

60S ribosomal protein uL13

Chain AN

60S ribosomal protein eL14

Chain AW

60S ribosomal protein uL22