J3_3JBP_015

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CAAAC*GUUG*CAUGUCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|C|113
3JBP|1|AA|A|114
3JBP|1|AA|A|115
3JBP|1|AA|A|116
3JBP|1|AA|C|117
*
3JBP|1|AA|G|160
3JBP|1|AA|U|161
3JBP|1|AA|U|162
3JBP|1|AA|G|163
*
3JBP|1|AA|C|268
3JBP|1|AA|A|269
3JBP|1|AA|U|270
3JBP|1|AA|G|271
3JBP|1|AA|U|272
3JBP|1|AA|C|273
3JBP|1|AA|G|274

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AJ

60S ribosomal protein eL8

Chain AL

60S ribosomal protein eL13

Chain AP

60S ribosomal protein eL15

Chain Ab

60S ribosomal protein eL36