J3_3JBP_017

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAAACAAG*UUAAAA*UAUACAGUAC

Length

25 nucleotides

Bulged bases

3JBP|1|AA|A|448, 3JBP|1|AA|U|694, 3JBP|1|AA|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|G|446
3JBP|1|AA|A|447
3JBP|1|AA|A|448
3JBP|1|AA|A|449
3JBP|1|AA|A|450
3JBP|1|AA|C|451
3JBP|1|AA|A|452
3JBP|1|AA|A|453
3JBP|1|AA|G|454
*
3JBP|1|AA|U|501
3JBP|1|AA|U|502
3JBP|1|AA|A|503
3JBP|1|AA|A|504
3JBP|1|AA|A|505
3JBP|1|AA|A|506
*
3JBP|1|AA|U|692
3JBP|1|AA|A|693
3JBP|1|AA|U|694
3JBP|1|AA|A|695
3JBP|1|AA|C|696
3JBP|1|AA|A|697
3JBP|1|AA|G|698
3JBP|1|AA|U|699
3JBP|1|AA|A|700
3JBP|1|AA|C|701

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein eL28

Chain A8

60S ribosomal protein eL32

Chain A9

60S ribosomal protein eL33

Chain AI

60S ribosomal protein eL6

Chain AW

60S ribosomal protein uL22