J3_3JBP_019

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CAAUCCCCU*ACU*ACUGG

Length

17 nucleotides

Bulged bases

3JBP|1|AA|U|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|C|540
3JBP|1|AA|A|541
3JBP|1|AA|A|542
3JBP|1|AA|U|543
3JBP|1|AA|C|544
3JBP|1|AA|C|545
3JBP|1|AA|C|546
3JBP|1|AA|C|547
3JBP|1|AA|U|548
*
3JBP|1|AA|A|580
3JBP|1|AA|C|581
3JBP|1|AA|U|582
*
3JBP|1|AA|A|608
3JBP|1|AA|C|609
3JBP|1|AA|U|610
3JBP|1|AA|G|611
3JBP|1|AA|G|612

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein uL4

Chain AN

60S ribosomal protein eL14

Chain AU

60S ribosomal protein eL20