J3_3JBP_021

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAG*CGAGUU*AUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|G|948
3JBP|1|AA|A|949
3JBP|1|AA|G|950
*
3JBP|1|AA|C|982
3JBP|1|AA|G|983
3JBP|1|AA|A|984
3JBP|1|AA|G|985
3JBP|1|AA|U|986
3JBP|1|AA|U|987
*
3JBP|1|AA|A|1010
3JBP|1|AA|U|1011
3JBP|1|AA|U|1012
3JBP|1|AA|U|1013
3JBP|1|AA|C|1014

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AT

60S ribosomal protein eL19

Chain Aa

60S ribosomal protein eL34

Chain Ac

60S ribosomal protein eL37

Chain Ah

60S ribosomal protein eL43