J3_3JBP_026

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUAG*UGUUUAAAG*CGU

Length

16 nucleotides

Bulged bases

3JBP|1|AA|U|1704, 3JBP|1|AA|A|1706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|A|1688
3JBP|1|AA|U|1689
3JBP|1|AA|A|1690
3JBP|1|AA|G|1691
*
3JBP|1|AA|U|1700
3JBP|1|AA|G|1701
3JBP|1|AA|U|1702
3JBP|1|AA|U|1703
3JBP|1|AA|U|1704
3JBP|1|AA|A|1705
3JBP|1|AA|A|1706
3JBP|1|AA|A|1707
3JBP|1|AA|G|1710
*
3JBP|1|AA|C|1723
3JBP|1|AA|G|1724
3JBP|1|AA|U|1725

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AD

60S ribosomal protein uL2

Chain AJ

60S ribosomal protein eL8

Chain AP

60S ribosomal protein eL15

Chain Ac

60S ribosomal protein eL37