J3_3JBP_036
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 3JBP|1|A|U|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_036 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1053
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JBP|1|A|U|640
3JBP|1|A|G|641
3JBP|1|A|A|642
*
3JBP|1|A|U|929
3JBP|1|A|A|930
3JBP|1|A|A|931
3JBP|1|A|U|932
3JBP|1|A|A|933
3JBP|1|A|G|934
*
3JBP|1|A|C|1031
3JBP|1|A|A|1032
3JBP|1|A|U|1033
3JBP|1|A|U|1034
3JBP|1|A|A|1035
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein eS27
- Chain J
- 40S ribosomal protein eS7
- Chain K
- 40S ribosomal protein uS8
- Chain Q
- 40S ribosomal protein uS12
- Chain U
- 40S ribosomal protein uS15
- Chain V
- 40S ribosomal protein uS17
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