J3_3JBP_044
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 3JBP|1|AA|C|3099, 3JBP|1|AA|U|3156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_044 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.1061
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
3JBP|1|AA|G|2990
3JBP|1|AA|U|2991
3JBP|1|AA|C|2992
*
3JBP|1|AA|G|3093
3JBP|1|AA|C|3094
3JBP|1|AA|C|3095
3JBP|1|AA|U|3096
3JBP|1|AA|A|3097
3JBP|1|AA|U|3098
3JBP|1|AA|C|3099
3JBP|1|AA|G|3100
3JBP|1|AA|A|3101
3JBP|1|AA|U|3102
3JBP|1|AA|C|3103
3JBP|1|AA|C|3104
*
3JBP|1|AA|G|3152
3JBP|1|AA|G|3153
3JBP|1|AA|U|3154
3JBP|1|AA|G|3155
3JBP|1|AA|U|3156
3JBP|1|AA|C|3157
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain AO
- 60S ribosomal protein uL15
- Chain AS
- 60S ribosomal protein eL18
- Chain AV
- 60S ribosomal protein eL21
- Chain Ai
- 60S ribosomal protein eL44
Coloring options: