J3_3JBP_045

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UAAAAG*CUAUCAC*GCAAUAGUUCUUUAA

Length

28 nucleotides

Bulged bases

3JBP|1|AA|U|3624, 3JBP|1|AA|C|3625, 3JBP|1|AA|U|3662, 3JBP|1|AA|A|3663, 3JBP|1|AA|G|3664, 3JBP|1|AA|U|3665, 3JBP|1|AA|U|3669, 3JBP|1|AA|A|3671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|U|3575
3JBP|1|AA|A|3576
3JBP|1|AA|A|3577
3JBP|1|AA|A|3578
3JBP|1|AA|A|3579
3JBP|1|AA|G|3580
*
3JBP|1|AA|C|3621
3JBP|1|AA|U|3622
3JBP|1|AA|A|3623
3JBP|1|AA|U|3624
3JBP|1|AA|C|3625
3JBP|1|AA|A|3626
3JBP|1|AA|C|3627
*
3JBP|1|AA|G|3658
3JBP|1|AA|C|3659
3JBP|1|AA|A|3660
3JBP|1|AA|A|3661
3JBP|1|AA|U|3662
3JBP|1|AA|A|3663
3JBP|1|AA|G|3664
3JBP|1|AA|U|3665
3JBP|1|AA|U|3666
3JBP|1|AA|C|3667
3JBP|1|AA|U|3668
3JBP|1|AA|U|3669
3JBP|1|AA|U|3670
3JBP|1|AA|A|3671
3JBP|1|AA|A|3672

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A9

60S ribosomal protein eL33

Chain AI

60S ribosomal protein eL6

Chain AK

60S ribosomal protein uL13

Chain AN

60S ribosomal protein eL14

Chain AW

60S ribosomal protein uL22