J3_3JBU_003

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGGUUUG*CAAGCUUG*CG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|A|C|586
3JBU|1|A|G|587
3JBU|1|A|G|588
3JBU|1|A|U|589
3JBU|1|A|U|590
3JBU|1|A|U|591
3JBU|1|A|G|592
*
3JBU|1|A|C|647
3JBU|1|A|A|648
3JBU|1|A|A|649
3JBU|1|A|G|650
3JBU|1|A|C|651
3JBU|1|A|U|652
3JBU|1|A|U|653
3JBU|1|A|G|654
*
3JBU|1|A|C|754
3JBU|1|A|G|755

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17