J3_3JBU_015

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AC*GAUAAGCG*CGAUUU

Length

16 nucleotides

Bulged bases

3JBU|1|b|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|A|56
3JBU|1|b|C|57
*
3JBU|1|b|G|70
3JBU|1|b|A|71
3JBU|1|b|U|72
3JBU|1|b|A|73
3JBU|1|b|A|74
3JBU|1|b|G|75
3JBU|1|b|C|76
3JBU|1|b|G|77
*
3JBU|1|b|C|109
3JBU|1|b|G|110
3JBU|1|b|A|111
3JBU|1|b|U|112
3JBU|1|b|U|113
3JBU|1|b|U|114

Current chains

Chain b

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L29

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23