J3_3JBU_016

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUGAUCUA*UGG*CAAAC

Length

16 nucleotides

Bulged bases

3JBU|1|b|U|686, 3JBU|1|b|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|G|682
3JBU|1|b|U|683
3JBU|1|b|G|684
3JBU|1|b|A|685
3JBU|1|b|U|686
3JBU|1|b|C|687
3JBU|1|b|U|688
3JBU|1|b|A|689
*
3JBU|1|b|U|773
3JBU|1|b|G|774
3JBU|1|b|G|775
*
3JBU|1|b|C|791
3JBU|1|b|A|792
3JBU|1|b|A|793
3JBU|1|b|A|794
3JBU|1|b|C|795

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain e

50S ribosomal protein L4

Chain z

SecM-glycine