J3_3JBU_020

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

ACACUG*CUAAC*GGACAGUGU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|A|2088
3JBU|1|b|C|2089
3JBU|1|b|A|2090
3JBU|1|b|C|2091
3JBU|1|b|U|2092
3JBU|1|b|G|2093
*
3JBU|1|b|C|2196
3JBU|1|b|U|2197
3JBU|1|b|A|2198
3JBU|1|b|A|2199
3JBU|1|b|C|2200
*
3JBU|1|b|G|2223
3JBU|1|b|G|2224
3JBU|1|b|A|2225
3JBU|1|b|C|2226
3JBU|1|b|A|2227
3JBU|1|b|G|2228
3JBU|1|b|U|2229
3JBU|1|b|G|2230
3JBU|1|b|U|2231

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain c

50S ribosomal protein L2

Chain h

50S ribosomal protein L9