J3_3JBU_039

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CCCAGACAGCCAGGAUG*CAUUUAAAG*CACUGGUCGAG

Length

37 nucleotides

Bulged bases

3JBU|1|b|A|1046, 3JBU|1|b|G|1056, 3JBU|1|b|A|1057, 3JBU|1|b|A|1084, 3JBU|1|b|A|1085, 3JBU|1|b|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|C|1043
3JBU|1|b|C|1044
3JBU|1|b|C|1045
3JBU|1|b|A|1046
3JBU|1|b|G|1047
3JBU|1|b|A|1048
3JBU|1|b|C|1049
3JBU|1|b|A|1050
3JBU|1|b|G|1051
3JBU|1|b|C|1052
3JBU|1|b|C|1053
3JBU|1|b|A|1054
3JBU|1|b|G|1055
3JBU|1|b|G|1056
3JBU|1|b|A|1057
3JBU|1|b|U|1058
3JBU|1|b|G|1059
*
3JBU|1|b|C|1079
3JBU|1|b|A|1080
3JBU|1|b|U|1081
3JBU|1|b|U|1082
3JBU|1|b|U|1083
3JBU|1|b|A|1084
3JBU|1|b|A|1085
3JBU|1|b|A|1086
3JBU|1|b|G|1087
*
3JBU|1|b|C|1102
3JBU|1|b|A|1103
3JBU|1|b|C|1104
3JBU|1|b|U|1105
3JBU|1|b|G|1106
3JBU|1|b|G|1107
3JBU|1|b|U|1108
3JBU|1|b|C|1109
3JBU|1|b|G|1110
3JBU|1|b|A|1111
3JBU|1|b|G|1112

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6