J3_3JBU_042

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CAAG*CCCAAACC*GGUG

Length

16 nucleotides

Bulged bases

3JBU|1|b|A|1609, 3JBU|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|C|1306
3JBU|1|b|A|1307
3JBU|1|b|A|1308
3JBU|1|b|G|1309
*
3JBU|1|b|C|1605
3JBU|1|b|C|1606
3JBU|1|b|C|1607
3JBU|1|b|A|1608
3JBU|1|b|A|1609
3JBU|1|b|A|1610
3JBU|1|b|C|1611
3JBU|1|b|C|1612
*
3JBU|1|b|G|1619
3JBU|1|b|G|1620
3JBU|1|b|U|1621
3JBU|1|b|G|1622

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34