J3_3JBU_049

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUUGG*CCGGAG*CGUUAAG

Length

18 nucleotides

Bulged bases

3JBU|1|A|U|871, 3JBU|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|A|C|826
3JBU|1|A|U|827
3JBU|1|A|U|828
3JBU|1|A|G|829
3JBU|1|A|G|830
*
3JBU|1|A|C|856
3JBU|1|A|C|857
3JBU|1|A|G|858
3JBU|1|A|G|859
3JBU|1|A|A|860
3JBU|1|A|G|861
*
3JBU|1|A|C|868
3JBU|1|A|G|869
3JBU|1|A|U|870
3JBU|1|A|U|871
3JBU|1|A|A|872
3JBU|1|A|A|873
3JBU|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8

Chain U

30S ribosomal protein S21