J3_3JBV_011
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBV_011 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.2947
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
3JBV|1|a|G|10
3JBV|1|a|C|11
3JBV|1|a|C|12
3JBV|1|a|G|13
3JBV|1|a|U|14
3JBV|1|a|A|15
3JBV|1|a|G|16
*
3JBV|1|a|C|68
3JBV|1|a|G|69
3JBV|1|a|C|70
*
3JBV|1|a|G|106
3JBV|1|a|G|107
3JBV|1|a|A|108
3JBV|1|a|A|109
3JBV|1|a|C|110
Current chains
- Chain a
- RNA (118-MER)
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- 50S ribosomal protein L18
- Chain w
- 50S ribosomal protein L25
- Chain y
- 50S ribosomal protein L27
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