J3_3JBV_014

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

3JBV|1|b|U|686, 3JBV|1|b|A|792, 3JBV|1|b|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBV_014 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1066

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3JBV|1|b|U|683
3JBV|1|b|G|684
3JBV|1|b|A|685
3JBV|1|b|U|686
3JBV|1|b|C|687
3JBV|1|b|U|688
3JBV|1|b|A|689
*
3JBV|1|b|U|773
3JBV|1|b|G|774
3JBV|1|b|G|775
*
3JBV|1|b|C|791
3JBV|1|b|A|792
3JBV|1|b|A|793
3JBV|1|b|A|794

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2