J3_3JBV_015

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBV_015 not in the Motif Atlas

Geometric match to J3_5J7L_039

Geometric discrepancy: 0.1415

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3JBV|1|b|C|698
3JBV|1|b|A|699
3JBV|1|b|G|700
*
3JBV|1|b|C|732
3JBV|1|b|G|733
3JBV|1|b|A|734
3JBV|1|b|A|735
3JBV|1|b|C|736
*
3JBV|1|b|G|760
3JBV|1|b|A|761
3JBV|1|b|U|762
3JBV|1|b|G|763

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain c

50S ribosomal protein L2