J3_3JBV_018

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CACUG*CUAAC*GGACAGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|C|2089
3JBV|1|b|A|2090
3JBV|1|b|C|2091
3JBV|1|b|U|2092
3JBV|1|b|G|2093
*
3JBV|1|b|C|2196
3JBV|1|b|U|2197
3JBV|1|b|A|2198
3JBV|1|b|A|2199
3JBV|1|b|C|2200
*
3JBV|1|b|G|2223
3JBV|1|b|G|2224
3JBV|1|b|A|2225
3JBV|1|b|C|2226
3JBV|1|b|A|2227
3JBV|1|b|G|2228
3JBV|1|b|U|2229
3JBV|1|b|G|2230

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 0

50S ribosomal protein L28

Chain c

50S ribosomal protein L2

Chain h

50S ribosomal protein L6