J3_3JBV_023

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GAGGGG*CCGCAUAACG*CCAAAGAGGGGGACCUUCGGGCCUCUUGC

Length

45 nucleotides

Bulged bases

3JBV|1|A|C|176, 3JBV|1|A|A|182, 3JBV|1|A|C|183, 3JBV|1|A|A|197, 3JBV|1|A|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|A|G|142
3JBV|1|A|A|143
3JBV|1|A|G|144
3JBV|1|A|G|145
3JBV|1|A|G|146
3JBV|1|A|G|147
*
3JBV|1|A|C|175
3JBV|1|A|C|176
3JBV|1|A|G|177
3JBV|1|A|C|178
3JBV|1|A|A|179
3JBV|1|A|U|180
3JBV|1|A|A|181
3JBV|1|A|A|182
3JBV|1|A|C|183
3JBV|1|A|G|184
*
3JBV|1|A|C|193
3JBV|1|A|C|194
3JBV|1|A|A|195
3JBV|1|A|A|196
3JBV|1|A|A|197
3JBV|1|A|G|198
3JBV|1|A|A|199
3JBV|1|A|G|200
3JBV|1|A|G|201
3JBV|1|A|G|202
3JBV|1|A|G|203
3JBV|1|A|G|204
3JBV|1|A|A|205
3JBV|1|A|C|206
3JBV|1|A|C|207
3JBV|1|A|U|208
3JBV|1|A|U|209
3JBV|1|A|C|210
3JBV|1|A|G|211
3JBV|1|A|G|212
3JBV|1|A|G|213
3JBV|1|A|C|214
3JBV|1|A|C|215
3JBV|1|A|U|216
3JBV|1|A|C|217
3JBV|1|A|U|218
3JBV|1|A|U|219
3JBV|1|A|G|220
3JBV|1|A|C|221

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain T

30S ribosomal protein S20