J3_3JBV_024

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGGUU*AGCUUGAG*CUGACG

Length

19 nucleotides

Bulged bases

3JBV|1|A|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|A|C|586
3JBV|1|A|G|587
3JBV|1|A|G|588
3JBV|1|A|U|589
3JBV|1|A|U|590
*
3JBV|1|A|A|649
3JBV|1|A|G|650
3JBV|1|A|C|651
3JBV|1|A|U|652
3JBV|1|A|U|653
3JBV|1|A|G|654
3JBV|1|A|A|655
3JBV|1|A|G|656
*
3JBV|1|A|C|750
3JBV|1|A|U|751
3JBV|1|A|G|752
3JBV|1|A|A|753
3JBV|1|A|C|754
3JBV|1|A|G|755

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17