J3_3JBV_036
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- CAGGAUGUUG*CAUCAUUUAAAGAAAGC*GCUCACUG
- Length
- 35 nucleotides
- Bulged bases
- 3JBV|1|b|G|1056, 3JBV|1|b|A|1057, 3JBV|1|b|U|1061, 3JBV|1|b|U|1078, 3JBV|1|b|U|1083, 3JBV|1|b|A|1084, 3JBV|1|b|A|1085, 3JBV|1|b|A|1086, 3JBV|1|b|A|1088, 3JBV|1|b|A|1089, 3JBV|1|b|A|1103
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBV|1|b|C|1053
3JBV|1|b|A|1054
3JBV|1|b|G|1055
3JBV|1|b|G|1056
3JBV|1|b|A|1057
3JBV|1|b|U|1058
3JBV|1|b|G|1059
3JBV|1|b|U|1060
3JBV|1|b|U|1061
3JBV|1|b|G|1062
*
3JBV|1|b|C|1076
3JBV|1|b|A|1077
3JBV|1|b|U|1078
3JBV|1|b|C|1079
3JBV|1|b|A|1080
3JBV|1|b|U|1081
3JBV|1|b|U|1082
3JBV|1|b|U|1083
3JBV|1|b|A|1084
3JBV|1|b|A|1085
3JBV|1|b|A|1086
3JBV|1|b|G|1087
3JBV|1|b|A|1088
3JBV|1|b|A|1089
3JBV|1|b|A|1090
3JBV|1|b|G|1091
3JBV|1|b|C|1092
*
3JBV|1|b|G|1099
3JBV|1|b|C|1100
3JBV|1|b|U|1101
3JBV|1|b|C|1102
3JBV|1|b|A|1103
3JBV|1|b|C|1104
3JBV|1|b|U|1105
3JBV|1|b|G|1106
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L5
- Chain i
- 50S ribosomal protein L9
Coloring options: