J3_3JBV_044

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGAAC*GUUGAU*AAUGAACC

Length

19 nucleotides

Bulged bases

3JBV|1|b|U|2833, 3JBV|1|b|A|2835, 3JBV|1|b|U|2884, 3JBV|1|b|G|2885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|G|2811
3JBV|1|b|G|2812
3JBV|1|b|A|2813
3JBV|1|b|A|2814
3JBV|1|b|C|2815
*
3JBV|1|b|G|2831
3JBV|1|b|U|2832
3JBV|1|b|U|2833
3JBV|1|b|G|2834
3JBV|1|b|A|2835
3JBV|1|b|U|2836
*
3JBV|1|b|A|2882
3JBV|1|b|A|2883
3JBV|1|b|U|2884
3JBV|1|b|G|2885
3JBV|1|b|A|2886
3JBV|1|b|A|2887
3JBV|1|b|C|2888
3JBV|1|b|C|2889

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 3

50S ribosomal protein L32

Chain d

50S ribosomal protein L11

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22