J3_3JCD_022

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCD_022 not in the Motif Atlas

Geometric match to J3_4LFB_005

Geometric discrepancy: 0.2108

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3JCD|1|a|C|990
3JCD|1|a|U|991
3JCD|1|a|U|992
3JCD|1|a|G|993
*
3JCD|1|a|C|1045
3JCD|1|a|A|1046
3JCD|1|a|G|1047
*
3JCD|1|a|C|1210
3JCD|1|a|U|1211
3JCD|1|a|U|1212
3JCD|1|a|A|1213
3JCD|1|a|C|1214
3JCD|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14