3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
3JCD|1|A|U|34, 3JCD|1|A|U|448, 3JCD|1|A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCD_028 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1089
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

3JCD|1|A|C|32
3JCD|1|A|C|33
3JCD|1|A|U|34
3JCD|1|A|G|35
*
3JCD|1|A|C|445
3JCD|1|A|G|446
3JCD|1|A|A|447
3JCD|1|A|U|448
3JCD|1|A|A|449
3JCD|1|A|G|450
3JCD|1|A|U|451
3JCD|1|A|G|452
3JCD|1|A|A|453
3JCD|1|A|A|454
3JCD|1|A|C|455
3JCD|1|A|C|456
3JCD|1|A|A|457
3JCD|1|A|G|458
3JCD|1|A|U|459
3JCD|1|A|A|460
3JCD|1|A|C|461
*
3JCD|1|A|G|468
3JCD|1|A|G|469
3JCD|1|A|A|470
3JCD|1|A|A|471
3JCD|1|A|A|472
3JCD|1|A|G|473

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain T
50S ribosomal protein L23

Coloring options:


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