J3_3JCE_004

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCE_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0896

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3JCE|1|A|C|698
3JCE|1|A|A|699
3JCE|1|A|G|700
*
3JCE|1|A|C|732
3JCE|1|A|G|733
3JCE|1|A|A|734
3JCE|1|A|A|735
3JCE|1|A|C|736
*
3JCE|1|A|G|760
3JCE|1|A|A|761
3JCE|1|A|U|762
3JCE|1|A|G|763

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2