3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
3JCE|1|A|U|2334, 3JCE|1|A|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCE_010 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1976
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

3JCE|1|A|C|2295
3JCE|1|A|U|2296
3JCE|1|A|A|2297
3JCE|1|A|A|2298
3JCE|1|A|U|2299
*
3JCE|1|A|A|2317
3JCE|1|A|G|2318
3JCE|1|A|G|2319
3JCE|1|A|U|2320
3JCE|1|A|U|2321
3JCE|1|A|A|2322
3JCE|1|A|G|2323
*
3JCE|1|A|C|2332
3JCE|1|A|A|2333
3JCE|1|A|U|2334
3JCE|1|A|A|2335
3JCE|1|A|A|2336
3JCE|1|A|G|2337

Current chains

Chain A
23 ribosomal RNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4958 s
Application loaded.