J3_3JCE_045

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

3JCE|1|A|U|686, 3JCE|1|A|A|792, 3JCE|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCE_045 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1091

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3JCE|1|A|U|683
3JCE|1|A|G|684
3JCE|1|A|A|685
3JCE|1|A|U|686
3JCE|1|A|C|687
3JCE|1|A|U|688
3JCE|1|A|A|689
*
3JCE|1|A|U|773
3JCE|1|A|G|774
3JCE|1|A|G|775
*
3JCE|1|A|C|791
3JCE|1|A|A|792
3JCE|1|A|A|793
3JCE|1|A|A|794

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2