J3_3JCE_046

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCE_046 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1298

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

3JCE|1|A|U|1344
3JCE|1|A|C|1345
3JCE|1|A|G|1346
3JCE|1|A|A|1347
3JCE|1|A|C|1348
3JCE|1|A|C|1349
*
3JCE|1|A|G|1382
3JCE|1|A|A|1383
3JCE|1|A|A|1384
3JCE|1|A|A|1385
*
3JCE|1|A|U|1402
3JCE|1|A|A|1403

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23