3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAUG*CGUAGUCCGGAUU*AUGAAGUCG
Length
27 nucleotides
Bulged bases
3JCE|1|a|U|1240, 3JCE|1|a|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JCE|1|a|C|1237
3JCE|1|a|A|1238
3JCE|1|a|A|1239
3JCE|1|a|U|1240
3JCE|1|a|G|1241
*
3JCE|1|a|C|1296
3JCE|1|a|G|1297
3JCE|1|a|U|1298
3JCE|1|a|A|1299
3JCE|1|a|G|1300
3JCE|1|a|U|1301
3JCE|1|a|C|1302
3JCE|1|a|C|1303
3JCE|1|a|G|1304
3JCE|1|a|G|1305
3JCE|1|a|A|1306
3JCE|1|a|U|1307
3JCE|1|a|U|1308
*
3JCE|1|a|A|1329
3JCE|1|a|U|1330
3JCE|1|a|G|1331
3JCE|1|a|A|1332
3JCE|1|a|A|1333
3JCE|1|a|G|1334
3JCE|1|a|U|1335
3JCE|1|a|C|1336
3JCE|1|a|G|1337

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain m
30S ribosomal protein S13

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.6269 s