J3_3JCJ_016

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_016 not in the Motif Atlas

Homologous match to J3_5J7L_002

Geometric discrepancy: 0.1296

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JCJ|1|g|C|586
3JCJ|1|g|G|587
3JCJ|1|g|G|588
*
3JCJ|1|g|C|651
3JCJ|1|g|U|652
3JCJ|1|g|U|653
3JCJ|1|g|G|654
*
3JCJ|1|g|C|754
3JCJ|1|g|G|755

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S8

Chain t

30S ribosomal protein S12

Chain u

30S ribosomal protein S15

Chain x

30S ribosomal protein S17