J3_3JCJ_018

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.129

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

3JCJ|1|g|C|936
3JCJ|1|g|A|937
3JCJ|1|g|A|938
3JCJ|1|g|G|939
*
3JCJ|1|g|C|1344
3JCJ|1|g|U|1345
3JCJ|1|g|A|1346
3JCJ|1|g|G|1347
3JCJ|1|g|U|1348
3JCJ|1|g|A|1349
3JCJ|1|g|A|1350
*
3JCJ|1|g|U|1372
3JCJ|1|g|G|1373
3JCJ|1|g|A|1374
3JCJ|1|g|A|1375
3JCJ|1|g|U|1376
3JCJ|1|g|A|1377
3JCJ|1|g|C|1378
3JCJ|1|g|G|1379

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S7

Chain o

30S ribosomal protein S9