J3_3JCJ_029

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

3JCJ|1|A|U|686, 3JCJ|1|A|A|792, 3JCJ|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_029 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1297

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|U|683
3JCJ|1|A|G|684
3JCJ|1|A|A|685
3JCJ|1|A|U|686
3JCJ|1|A|C|687
3JCJ|1|A|U|688
3JCJ|1|A|A|689
*
3JCJ|1|A|U|773
3JCJ|1|A|G|774
3JCJ|1|A|G|775
*
3JCJ|1|A|C|791
3JCJ|1|A|A|792
3JCJ|1|A|A|793
3JCJ|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain b

50S ribosomal protein L34