J3_3JCJ_037

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

3JCJ|1|g|U|1212, 3JCJ|1|g|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_037 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1417

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

3JCJ|1|g|C|990
3JCJ|1|g|U|991
3JCJ|1|g|U|992
3JCJ|1|g|G|993
3JCJ|1|g|A|994
3JCJ|1|g|C|995
3JCJ|1|g|A|996
3JCJ|1|g|U|997
*
3JCJ|1|g|A|1044
3JCJ|1|g|C|1045
3JCJ|1|g|A|1046
3JCJ|1|g|G|1047
*
3JCJ|1|g|C|1210
3JCJ|1|g|U|1211
3JCJ|1|g|U|1212
3JCJ|1|g|A|1213
3JCJ|1|g|C|1214
3JCJ|1|g|G|1215

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain w

30S ribosomal protein S14