J3_3JCN_036

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

3JCN|1|a|U|1212

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCN_036 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1323

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

3JCN|1|a|C|990
3JCN|1|a|U|991
3JCN|1|a|U|992
3JCN|1|a|G|993
3JCN|1|a|A|994
3JCN|1|a|C|995
3JCN|1|a|A|996
3JCN|1|a|U|997
*
3JCN|1|a|A|1044
3JCN|1|a|C|1045
3JCN|1|a|A|1046
3JCN|1|a|G|1047
*
3JCN|1|a|C|1210
3JCN|1|a|U|1211
3JCN|1|a|U|1212
3JCN|1|a|A|1213
3JCN|1|a|C|1214
3JCN|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S14