J3_3JCS_010

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUC*GAACAUGC*GCUAGG

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|5|C|7
3JCS|1|5|C|8
3JCS|1|5|U|9
3JCS|1|5|C|10
*
3JCS|1|5|G|22
3JCS|1|5|A|23
3JCS|1|5|A|24
3JCS|1|5|C|25
3JCS|1|5|A|26
3JCS|1|5|U|27
3JCS|1|5|G|28
3JCS|1|5|C|29
*
3JCS|1|5|G|121
3JCS|1|5|C|122
3JCS|1|5|U|123
3JCS|1|5|A|125
3JCS|1|5|G|126
3JCS|1|5|G|127

Current chains

Chain 5

26S epsilon ribosomal RNA

Nearby chains

Chain 4

Large subunit ribosomal RNA; LSU rRNA

Chain B

ribosomal protein L3

Chain T

ribosomal protein L22

Chain e

ribosomal protein L31e