J3_3JCS_012

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAUACU*AGG*UG

Length

12 nucleotides

Bulged bases

3JCS|1|8|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|8|C|11
3JCS|1|8|C|12
3JCS|1|8|A|13
3JCS|1|8|U|14
3JCS|1|8|A|15
3JCS|1|8|C|16
3JCS|1|8|U|17
*
3JCS|1|8|A|66
3JCS|1|8|G|67
3JCS|1|8|G|68
*
3JCS|1|8|U|111
3JCS|1|8|G|112

Current chains

Chain 8

5S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain D

ribosomal protein L5

Chain N

ribosomal protein L16

Chain O

ribosomal protein L18

Chain S

ribosomal protein L21e