J3_3JCS_013
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAAUUCAAGCGCAAAGCAAACCCGU*AACCCUUCAUGUGAGUAUUGAGCCAAAGAAG*CAUUGAG
- Length
- 65 nucleotides
- Bulged bases
- 3JCS|1|1|U|191, 3JCS|1|1|G|197, 3JCS|1|1|A|205, 3JCS|1|1|U|231, 3JCS|1|1|G|232, 3JCS|1|1|G|236, 3JCS|1|1|A|246, 3JCS|1|1|G|249, 3JCS|1|1|A|250, 3JCS|1|1|A|251
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|C|185
3JCS|1|1|G|186
3JCS|1|1|A|187
3JCS|1|1|A|188
3JCS|1|1|A|189
3JCS|1|1|U|190
3JCS|1|1|U|191
3JCS|1|1|C|192
3JCS|1|1|A|193
3JCS|1|1|A|194
3JCS|1|1|G|195
3JCS|1|1|C|196
3JCS|1|1|G|197
3JCS|1|1|C|198
3JCS|1|1|A|199
3JCS|1|1|A|200
3JCS|1|1|A|201
3JCS|1|1|G|202
3JCS|1|1|C|203
3JCS|1|1|A|204
3JCS|1|1|A|205
3JCS|1|1|A|206
3JCS|1|1|C|207
3JCS|1|1|C|208
3JCS|1|1|C|209
3JCS|1|1|G|210
3JCS|1|1|U|211
*
3JCS|1|1|A|222
3JCS|1|1|A|223
3JCS|1|1|C|224
3JCS|1|1|C|225
3JCS|1|1|C|226
3JCS|1|1|U|227
3JCS|1|1|U|228
3JCS|1|1|C|229
3JCS|1|1|A|230
3JCS|1|1|U|231
3JCS|1|1|G|232
3JCS|1|1|U|233
3JCS|1|1|G|234
3JCS|1|1|A|235
3JCS|1|1|G|236
3JCS|1|1|U|237
3JCS|1|1|A|238
3JCS|1|1|U|239
3JCS|1|1|U|240
3JCS|1|1|G|241
3JCS|1|1|A|242
3JCS|1|1|G|243
3JCS|1|1|C|244
3JCS|1|1|C|245
3JCS|1|1|A|246
3JCS|1|1|A|247
3JCS|1|1|A|248
3JCS|1|1|G|249
3JCS|1|1|A|250
3JCS|1|1|A|251
3JCS|1|1|G|252
*
3JCS|1|1|C|262
3JCS|1|1|A|263
3JCS|1|1|U|264
3JCS|1|1|U|265
3JCS|1|1|G|266
3JCS|1|1|A|267
3JCS|1|1|G|268
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- ribosomal protein L4
- Chain T
- ribosomal protein L22
- Chain W
- ribosomal protein L24
- Chain f
- ribosomal protein L32e
Coloring options: