J3_3JCS_014
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAG*CGAAAGUU*ACUUG
- Length
- 30 nucleotides
- Bulged bases
- 3JCS|1|1|U|383, 3JCS|1|1|A|391, 3JCS|1|1|U|409, 3JCS|1|7|U|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|C|380
3JCS|1|1|G|381
3JCS|1|1|A|382
3JCS|1|1|U|383
3JCS|1|1|A|384
3JCS|1|1|G|385
3JCS|1|1|C|386
3JCS|1|1|G|387
3JCS|1|1|A|388
3JCS|1|1|A|389
3JCS|1|1|C|390
3JCS|1|1|A|391
3JCS|1|1|A|392
3JCS|1|1|G|393
3JCS|1|1|U|394
3JCS|1|1|A|395
3JCS|1|1|G|396
*
3JCS|1|1|C|403
3JCS|1|1|G|404
3JCS|1|1|A|405
3JCS|1|1|A|406
3JCS|1|1|A|407
3JCS|1|1|G|408
3JCS|1|1|U|409
3JCS|1|1|U|410
*
3JCS|1|7|A|19
3JCS|1|7|C|20
3JCS|1|7|U|21
3JCS|1|7|U|22
3JCS|1|7|G|23
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- ribosomal protein L4
- Chain W
- ribosomal protein L24
- Chain j
- ribosomal protein L37e
- Chain l
- ribosomal protein L39e
Coloring options: