J3_3JCS_017
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAA*UUUUGUUAGGAAAGUGAAGGUG*CAUAACUGAAAAGG
- Length
- 39 nucleotides
- Bulged bases
- 3JCS|1|1|U|1662, 3JCS|1|1|U|1663, 3JCS|1|1|A|1667, 3JCS|1|1|G|1669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|C|1647
3JCS|1|1|A|1648
3JCS|1|1|A|1649
*
3JCS|1|1|U|1660
3JCS|1|1|U|1661
3JCS|1|1|U|1662
3JCS|1|1|U|1663
3JCS|1|1|G|1664
3JCS|1|1|U|1665
3JCS|1|1|U|1666
3JCS|1|1|A|1667
3JCS|1|1|G|1668
3JCS|1|1|G|1669
3JCS|1|1|A|1670
3JCS|1|1|A|1671
3JCS|1|1|A|1672
3JCS|1|1|G|1673
3JCS|1|1|U|1674
3JCS|1|1|G|1675
3JCS|1|1|A|1676
3JCS|1|1|A|1677
3JCS|1|1|G|1678
3JCS|1|1|G|1679
3JCS|1|1|U|1680
3JCS|1|1|G|1681
*
3JCS|1|1|C|1721
3JCS|1|1|A|1722
3JCS|1|1|U|1723
3JCS|1|1|A|1724
3JCS|1|1|A|1725
3JCS|1|1|C|1726
3JCS|1|1|U|1727
3JCS|1|1|G|1728
3JCS|1|1|A|1729
3JCS|1|1|A|1730
3JCS|1|1|A|1731
3JCS|1|1|A|1732
3JCS|1|1|G|1733
3JCS|1|1|G|1734
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 26S gamma ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- ribosomal protein L2
- Chain G
- ribosomal protein L8e
- Chain M
- ribosomal protein L15e
- Chain V
- ribosomal protein L23
- Chain j
- ribosomal protein L37e
Coloring options: