J3_3JCS_018

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMG)UC*GCC(A2M)GCGAUCC*GGUGUC

Length

20 nucleotides

Bulged bases

3JCS|1|2|C|1188, 3JCS|1|2|U|1236

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCS|1|2|OMG|1079
3JCS|1|2|U|1080
3JCS|1|2|C|1081
*
3JCS|1|2|G|1183
3JCS|1|2|C|1184
3JCS|1|2|C|1185
3JCS|1|2|A2M|1186
3JCS|1|2|G|1187
3JCS|1|2|C|1188
3JCS|1|2|G|1189
3JCS|1|2|A|1190
3JCS|1|2|U|1191
3JCS|1|2|C|1192
3JCS|1|2|C|1193
*
3JCS|1|2|G|1232
3JCS|1|2|G|1233
3JCS|1|2|U|1234
3JCS|1|2|G|1235
3JCS|1|2|U|1236
3JCS|1|2|C|1237

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain L

ribosomal protein L15

Chain P

ribosomal protein L18e

Chain S

ribosomal protein L21e

Chain n

ribosomal protein L44e