J3_3JCT_001
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 3JCT|1|1|U|117, 3JCT|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCT_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.1079
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3JCT|1|1|C|113
3JCT|1|1|A|114
3JCT|1|1|A|115
3JCT|1|1|A|116
3JCT|1|1|U|117
3JCT|1|1|U|118
3JCT|1|1|U|119
3JCT|1|1|G|120
3JCT|1|1|A|121
3JCT|1|1|A|122
3JCT|1|1|A|123
*
3JCT|1|1|U|149
3JCT|1|1|A|150
3JCT|1|1|A|151
3JCT|1|1|U|152
3JCT|1|1|U|153
3JCT|1|1|U|154
3JCT|1|1|G|155
3JCT|1|1|G|156
3JCT|1|1|A|157
3JCT|1|1|G|158
*
3JCT|1|1|C|263
3JCT|1|1|G|264
3JCT|1|1|A|265
3JCT|1|1|A|266
3JCT|1|1|G|267
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
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