Motif J3_69230.1 Version J3_69230.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15		16		17	break		18		19		20		21		22	1-22	2-14	3-15	4-12	8-9	16-19	16-20	17-18
1	J3_8P9A_042	8P9A	0.0708	4	AR	LSU rRNA	C	113	A	114	A	115	A	116	U	118	U	119	A	122	A	123	*	U	149	A	150	A	151	U	152	U	153	U	154	G	155	A	157	G	158	*	C	263	G	264	A	265	A	266	G	267	cWW	tHW			cWW	tHS		cWW
2	J3_8OI5_001	8OI5	0.0000	4	1	LSU rRNA	C	112	A	113	A	114	A	115	U	117	U	118	A	121	A	122	*	U	148	A	149	A	150	U	151	U	152	U	153	G	154	A	156	G	157	*	C	263	G	264	A	265	C	266	G	267	cWW	tHW			cWW	tHS		cWW
3	J3_9AXU_001	9AXU	0.1167	4	2	LSU rRNA	C	113	A	114	A	115	A	116	U	118	U	119	A	122	A	123	*	U	155	A	156	A	157	U	158	U	159	U	160	C	161	A	163	G	164	*	C	271	G	272	A	273	A	274	G	275	cWW	tHW	ncWB	ntHW	cWW	tHS	ncWB	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAAUUUGAAAUAAUUUGGAGCGAAG	1
CAAAUUUGAAAUAAUUUGAAGCGACG	1
CAAAUUUGAAAUAAUUUCAAGCGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAAUUUGAAAAUUUGGAGAA	1
AAAUUUGAAAAUUUGAAGAC	1
AAAUUUGAAAAUUUCAAGAA	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
Heat map statistics: Min 0.07 | Avg 0.07 | Max 0.12

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Coloring options: Nucleotide numbers

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