J3_3JCT_019

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UU*AGAAGU*ACAUUUGA

Length

16 nucleotides

Bulged bases

3JCT|1|1|A|1065, 3JCT|1|1|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCT_019 not in the Motif Atlas

Geometric match to J3_5TBW_063

Geometric discrepancy: 0.2519

The information below is about J3_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.2

Basepair signature

cWW-cWW-cSS-F-cWW-F-F-cWW-F

Number of instances in this motif group

3

Unit IDs

3JCT|1|1|U|986
3JCT|1|1|U|987
*
3JCT|1|1|A|1062
3JCT|1|1|G|1063
3JCT|1|1|A|1064
3JCT|1|1|A|1065
3JCT|1|1|G|1066
3JCT|1|1|U|1067
*
3JCT|1|1|A|1091
3JCT|1|1|C|1092
3JCT|1|1|A|1093
3JCT|1|1|U|1094
3JCT|1|1|U|1095
3JCT|1|1|U|1096
3JCT|1|1|G|1097
3JCT|1|1|A|1098

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain T

60S ribosomal protein L21-A