J3_3JD5_010

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUUC*GCAGUAA*UGAAUUAG

Length

19 nucleotides

Bulged bases

3JD5|1|A|A|784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JD5_010 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.543

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

3JD5|1|A|C|537
3JD5|1|A|U|538
3JD5|1|A|U|539
3JD5|1|A|C|540
*
3JD5|1|A|G|782
3JD5|1|A|C|783
3JD5|1|A|A|784
3JD5|1|A|G|785
3JD5|1|A|U|786
3JD5|1|A|A|787
3JD5|1|A|A|788
*
3JD5|1|A|U|810
3JD5|1|A|G|811
3JD5|1|A|A|812
3JD5|1|A|A|813
3JD5|1|A|U|814
3JD5|1|A|U|815
3JD5|1|A|A|816
3JD5|1|A|G|817

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain G

28S ribosomal protein S7, mitochondrial

Chain I

28S ribosomal protein S9, mitochondrial

Chain m

Coiled-coil-helix-coiled-coil-helix domain containing 1