J3_3JYV_007
3D structure
- PDB id
- 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UUCUAG*CGAGACC*GGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- 3JYV|1|A|A|1328, 3JYV|1|A|A|1418
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JYV_007 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.2163
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3JYV|1|A|U|1279
3JYV|1|A|U|1280
3JYV|1|A|C|1281
3JYV|1|A|U|1282
3JYV|1|A|A|1284
3JYV|1|A|G|1285
*
3JYV|1|A|C|1324
3JYV|1|A|G|1325
3JYV|1|A|A|1326
3JYV|1|A|G|1327
3JYV|1|A|A|1328
3JYV|1|A|C|1329
3JYV|1|A|C|1330
*
3JYV|1|A|G|1415
3JYV|1|A|G|1416
3JYV|1|A|C|1417
3JYV|1|A|A|1418
3JYV|1|A|A|1419
3JYV|1|A|U|1420
3JYV|1|A|A|1421
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S3
- Chain E
- 40S ribosomal protein S2
- Chain I
- 40S ribosomal protein S16(A)
- Chain J
- 40S ribosomal protein S20
- Chain N
- 40S ribosomal protein S29(A)
Coloring options: