J3_3JYV_015
3D structure
- PDB id
- 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 3JYV|1|A|U|1411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JYV_015 not in the Motif Atlas
- Geometric match to J3_4LFB_008
- Geometric discrepancy: 0.2394
- The information below is about J3_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.5
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JYV|1|A|A|1333
3JYV|1|A|A|1334
3JYV|1|A|C|1335
*
3JYV|1|A|G|1383
3JYV|1|A|G|1384
3JYV|1|A|A|1385
3JYV|1|A|C|1386
*
3JYV|1|A|G|1409
3JYV|1|A|U|1410
3JYV|1|A|U|1411
3JYV|1|A|U|1412
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain I
- 40S ribosomal protein S16(A)
- Chain J
- 40S ribosomal protein S20
- Chain R
- RACK1 protein
Coloring options: