Motif J3_82365.8 Version J3_82365.8 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 3-4 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_008 | 4LFB | 0.8701 | 2 | A | SSU rRNA | C | 1116 | G | 1117 | C | 1118 | * | G | 1155 | G | 1156 | A | 1157 | C | 1158 | * | G | 1181 | G | 1184 | cWW | cWW | cWW |
| 2 | J3_8B0X_012 | 8B0X | 0.8497 | 2 | A | SSU rRNA | U | 1116 | A | 1117 | U | 1118 | * | A | 1155 | G | 1156 | A | 1157 | C | 1158 | * | G | 1181 | G | 1184 | cWW | cWW | cWW |
| 3 | J3_9H3G_041 | 9H3G | 0.1792 | 2 | h1 | SSU rRNA | A | 1337 | G | 1338 | C | 1339 | * | G | 1389 | G | 1390 | A | 1391 | C | 1392 | * | G | 1415 | U | 1418 | cWW | cWW | cWW |
| 4 | J3_9PN5_041 | 9PN5 | 0.0730 | 2 | B5 | SSU rRNA | A | 1336 | A | 1337 | C | 1338 | * | G | 1386 | G | 1387 | A | 1388 | C | 1389 | * | G | 1412 | PSU | 1415 | cWW | cWW | cWW |
| 5 | J3_9SUM_038 | 9SUM | 0.0000 | 2 | CA | SSU rRNA | A | 1306 | A | 1307 | C | 1308 | * | G | 1362 | G | 1363 | A | 1364 | C | 1365 | * | G | 1388 | U | 1391 | cWW | cWW | cWW |
| 6 | J3_8CRE_084 | 8CRE | 0.0889 | 2 | CM | SSU rRNA | A | 1321 | A | 1322 | C | 1323 | * | G | 1372 | G | 1373 | A | 1374 | C | 1375 | * | G | 1398 | U | 1401 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAC*GGAC*GUUU | 2 |
| CGC*GGAC*GGAG | 1 |
| UAU*AGAC*GGUG | 1 |
| AGC*GGAC*GUUU | 1 |
| AAC*GGAC*GUUPSU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GA*UU | 3 |
| G*GA*GA | 1 |
| A*GA*GU | 1 |
| G*GA*UU | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.95
Coloring options: