J3_3MOJ_001

3D structure

PDB id

3MOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RNA binding domain of the Bacillus subtilis YxiN protein complexed with a fragment of 23S ribosomal RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CA*UA*UUUAAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70599.1

Basepair signature

cWW-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

3

Unit IDs

3MOJ|1|A|C|2517
3MOJ|1|A|A|2518
*
3MOJ|1|A|U|2546
3MOJ|1|A|A|2547
*
3MOJ|1|A|U|2561
3MOJ|1|A|U|2562
3MOJ|1|A|U|2563
3MOJ|1|A|A|2564
3MOJ|1|A|A|2565
3MOJ|1|A|A|2566
3MOJ|1|A|G|2567

Current chains

Chain A

RNA (69-MER)

Nearby chains

Chain B

ATP-dependent RNA helicase dbpA